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Lab 7

End-to-End Data Mining

Keep a record of your work, then use it: the DepMap table from the lecture, from raw columns to the figure that shows why skin cancer needs SOX10 and almost nothing else does.

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1

Git: a lab notebook for code

  • →git init, and git status as the command you type most
  • →the add / commit cycle, and what staging is actually for
  • →reading history: log, diff, show — then git restore when you break something
  • →.gitignore, then GitHub: remote, push, and why your password will not work
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2

From Table to Figure: the SOX10 Story

  • →01 · finding the suspects: filter, mean, nsmallest — and why RAN tops every list
  • →02 · showing it: fig and ax, histogram, grey-plus-highlight scatter, box with dots
  • →03 · a grid and a loose end: subplots(2, 2), axes.flat, a reusable plotting function
  • →then a free matplotlib course to take it further
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